=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for bowtie2-2.5.4.tar.gz => Checksum SHA512 OK for bowtie2-2.5.4.tar.gz ===> Installing dependencies for bowtie2-2.5.4 ========================================================================== The following variables will affect the build process of this package, bowtie2-2.5.4. Their current value is shown below: * PYTHON_VERSION_DEFAULT = 311 Based on these variables, the following variables have been set: * PYPACKAGE = python311 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency gmake>=3.81: found gmake-4.4.1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Build dependency simde>=0.7.2: found simde-0.8.2 => Full dependency perl>=5.0: found perl-5.38.2 => Full dependency python311>=3.11.0: found python311-3.11.9nb1 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for bowtie2-2.5.4 ===> Extracting for bowtie2-2.5.4 ===> Patching for bowtie2-2.5.4 => Applying pkgsrc patches for bowtie2-2.5.4 ===> Creating toolchain wrappers for bowtie2-2.5.4 ===> Configuring for bowtie2-2.5.4 => Replacing python interpreter in bowtie2-build bowtie2-inspect. => Replacing Perl interpreter in scripts/*.pl bowtie2. => Replacing sh interpreter in scripts/bowtie2-hbb.sh.