=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for MACS2-2.2.9.1.tar.gz => Checksum SHA512 OK for MACS2-2.2.9.1.tar.gz ===> Installing dependencies for py39-macs2-2.2.9.1 ========================================================================== The following variables will affect the build process of this package, py39-macs2-2.2.9.1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 311 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python39 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py39-cython-[0-9]*: found py39-cython-3.0.6 => Tool dependency py39-build>=0: found py39-build-1.0.3nb1 => Tool dependency py39-installer>=0.7.0nb1: found py39-installer-0.7.0nb1 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Full dependency python39>=3.9.0: found python39-3.9.18nb4 => Full dependency py39-numpy>=1.20.3nb1: found py39-numpy-1.26.2nb1 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py39-macs2-2.2.9.1 ===> Extracting for py39-macs2-2.2.9.1 ===> Patching for py39-macs2-2.2.9.1 => Applying pkgsrc patches for py39-macs2-2.2.9.1 ===> Creating toolchain wrappers for py39-macs2-2.2.9.1 ===> Configuring for py39-macs2-2.2.9.1 mv -f /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/cPosValCalculation.c /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1 /bin/rm -f /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*.c /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*/*.c cd /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1 && /usr/pkg/bin/cythonize-3.9 /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakDetect.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakDetect.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakModel.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakModel.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Pileup.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Pileup.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Prob.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Prob.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Signal.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Signal.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Statistics.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Statistics.pyx cd /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1 && /usr/pkg/bin/cythonize-3.9 /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*/*.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraph.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraph.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraphIO.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraphIO.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/CallPeakUnit.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/CallPeakUnit.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/FixWidthTrack.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/FixWidthTrack.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PairedEndTrack.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PairedEndTrack.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/Parser.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/Parser.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PeakIO.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PeakIO.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/ScoreTrack.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/ScoreTrack.pyx mv -f /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/cPosValCalculation.c /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2