=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for libpll-0.3.2
--- ./aclocal.m4 ---
CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing aclocal-1.14 -I m4 --install
WARNING: 'aclocal' is missing on your system. You should only need it if
you modified 'acinclude.m4' or 'configure.ac'. You might want
to install the Automake and Perl packages. Grab them from
any GNU archive site.
--- ./configure ---
--- ./config.h.in ---
--- ./configure ---
CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing autoconf
--- ./config.h.in ---
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing autoheader)
--- ./configure ---
WARNING: 'autoconf' is missing on your system. You should only need it if
you modified 'configure.ac'. You might want to install the
Autoconf and GNU m4 packages. Grab them from any GNU
archive site.
--- ./config.h.in ---
WARNING: 'autoheader' is missing on your system. You should only need it if
you modified 'acconfig.h' or 'configure.ac'. You might want
to install the Autoconf and GNU m4 packages. Grab them
from any GNU archive site.
--- ./config.status ---
/bin/sh ./config.status --recheck
--- ./config.h.in ---
rm -f stamp-h1
touch ./config.h.in
--- stamp-h1 ---
cd . && /bin/sh ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
--- config.h ---
--- all ---
/usr/bin/make all-recursive
--- all-recursive ---
Making all in src
--- ./Makefile.in ---
--- ../config.status ---
--- libpll_la-fasta.lo ---
--- libpll_la-gamma.lo ---
--- libpll_la-likelihood.lo ---
--- libpll_la-list.lo ---
--- libpll_la-maps.lo ---
--- libpll_la-models.lo ---
--- ../config.status ---
cd .. && /usr/bin/make am--refresh
--- libpll_la-fasta.lo ---
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-fasta.lo -MD -MP -MF .deps/libpll_la-fasta.Tpo -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c
--- libpll_la-gamma.lo ---
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-gamma.lo -MD -MP -MF .deps/libpll_la-gamma.Tpo -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c
--- libpll_la-likelihood.lo ---
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-likelihood.lo -MD -MP -MF .deps/libpll_la-likelihood.Tpo -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c
--- libpll_la-list.lo ---
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-list.lo -MD -MP -MF .deps/libpll_la-list.Tpo -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c
--- libpll_la-maps.lo ---
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-maps.lo -MD -MP -MF .deps/libpll_la-maps.Tpo -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c
--- libpll_la-models.lo ---
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-models.lo -MD -MP -MF .deps/libpll_la-models.Tpo -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c
--- ../config.status ---
--- ./Makefile.in ---
cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing automake-1.14 --foreign
--- ./Makefile.in ---
--- ./Makefile.in ---
cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing automake-1.14 --foreign
--- ../config.status ---
WARNING: 'automake' is missing on your system. You should only need it if
you modified 'Makefile.am', 'acinclude.m4' or 'configure.ac'.
You might want to install the Automake and Perl packages.
Grab them from any GNU archive site.
--- ./Makefile.in ---
WARNING: 'automake' is missing on your system. You should only need it if
you modified 'Makefile.am', 'acinclude.m4' or 'configure.ac'.
You might want to install the Automake and Perl packages.
Grab them from any GNU archive site.
--- ../config.status ---
--- ./config.status ---
/bin/sh ./config.status --recheck
--- ./Makefile.in ---
--- ./config.status ---
/bin/sh ./config.status --recheck
--- libpll_la-list.lo ---
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-list.lo -MD -MP -MF .deps/libpll_la-list.Tpo -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o
--- libpll_la-likelihood.lo ---
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-likelihood.lo -MD -MP -MF .deps/libpll_la-likelihood.Tpo -c likelihood.c -fPIC -DPIC -o .libs/libpll_la-likelihood.o
--- libpll_la-gamma.lo ---
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-gamma.lo -MD -MP -MF .deps/libpll_la-gamma.Tpo -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o
--- libpll_la-maps.lo ---
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-maps.lo -MD -MP -MF .deps/libpll_la-maps.Tpo -c maps.c -fPIC -DPIC -o .libs/libpll_la-maps.o
--- libpll_la-models.lo ---
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-models.lo -MD -MP -MF .deps/libpll_la-models.Tpo -c models.c -fPIC -DPIC -o .libs/libpll_la-models.o
--- ./Makefile.in ---
--- Makefile ---
--- libpll_la-fasta.lo ---
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-fasta.lo -MD -MP -MF .deps/libpll_la-fasta.Tpo -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o
--- ./Makefile.in ---
cd . && /bin/sh ./config.status Makefile
--- ../config.status ---
--- Makefile ---
cd . && /bin/sh ./config.status Makefile
--- libpll_la-list.lo ---
In file included from list.c:22:
pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory
56 | #include <sys/sysinfo.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
*** [libpll_la-list.lo] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- libpll_la-gamma.lo ---
In file included from gamma.c:22:
pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory
56 | #include <sys/sysinfo.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
*** [libpll_la-gamma.lo] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- libpll_la-maps.lo ---
In file included from maps.c:22:
pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory
56 | #include <sys/sysinfo.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
--- libpll_la-models.lo ---
In file included from models.c:22:
pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory
56 | #include <sys/sysinfo.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
--- libpll_la-maps.lo ---
*** [libpll_la-maps.lo] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- libpll_la-models.lo ---
*** [libpll_la-models.lo] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- libpll_la-likelihood.lo ---
In file included from likelihood.c:22:
pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory
56 | #include <sys/sysinfo.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
*** [libpll_la-likelihood.lo] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- libpll_la-fasta.lo ---
In file included from fasta.c:22:
pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory
56 | #include <sys/sysinfo.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
*** [libpll_la-fasta.lo] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- ./Makefile.in ---
config.status: creating Makefile
*** [./Makefile.in] Error code 1
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
--- ../config.status ---
config.status: creating Makefile
*** [../config.status] Error code 6
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
8 errors
make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src
make[1]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2
make: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2
*** Error code 2
Stop.
make[1]: stopped in /usr/pkgsrc/biology/libpll
*** Error code 1
Stop.
make: stopped in /usr/pkgsrc/biology/libpll