=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for kallisto-0.50.1.tar.gz
=> Checksum SHA512 OK for kallisto-0.50.1.tar.gz
===> Installing dependencies for kallisto-0.50.1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency autoconf>=2.50: found autoconf-2.72
=> Tool dependency cmake>=3.18: found cmake-3.28.3
=> Tool dependency gmake>=3.81: found gmake-4.4.1
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Full dependency hdf5>=1.8.11: found hdf5-1.12.2
=> Full dependency libaec>=1.0.4: found libaec-1.0.6
=> Full dependency htslib>=1.17: found htslib-1.17nb3
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for kallisto-0.50.1
===> Extracting for kallisto-0.50.1
/bin/cp /usr/pkgsrc/biology/kallisto/files/kallisto-test /pbulk/work/biology/kallisto/work/kallisto-0.50.1
/bin/rm -rf /pbulk/work/biology/kallisto/work/kallisto-0.50.1/ext/htslib
===> Patching for kallisto-0.50.1
=> Applying pkgsrc patches for kallisto-0.50.1
===> Creating toolchain wrappers for kallisto-0.50.1
===> Configuring for kallisto-0.50.1
=> Substituting "test" in kallisto-test
=> Fixing CMAKE_MODULE_PATH in CMakeLists.txt
INFO: [subst.mk:cmake] Nothing changed in "CMakeLists.txt".
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- The C compiler identification is GNU 10.5.0
-- The CXX compiler identification is GNU 10.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /pbulk/work/biology/kallisto/work/.cwrapper/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /pbulk/work/biology/kallisto/work/.cwrapper/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_CXX17
-- Performing Test COMPILER_SUPPORTS_CXX17 - Success
shared build
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found HDF5: /usr/pkg/lib/libhdf5.so;/usr/pkg/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libm.so (found version "1.12.2")  
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.13")  
-- Configuring done (5.0s)
-- Generating done (0.0s)
-- Build files have been written to: /pbulk/work/biology/kallisto/work/kallisto-0.50.1
=> Rewrite cmake Dependencies files