=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for MACS2-2.2.9.1.tar.gz => Checksum SHA512 OK for MACS2-2.2.9.1.tar.gz ===> Installing dependencies for py310-macs2-2.2.9.1 ========================================================================== The following variables will affect the build process of this package, py310-macs2-2.2.9.1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 312 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python310 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py310-cython-[0-9]*: found py310-cython-3.0.11 => Tool dependency py310-setuptools-[0-9]*: found py310-setuptools-72.2.0 => Tool dependency py310-wheel-[0-9]*: found py310-wheel-0.44.0 => Tool dependency py310-build>=0: found py310-build-1.2.1 => Tool dependency py310-installer>=0.7.0nb1: found py310-installer-0.7.0nb1 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Full dependency python310>=3.10: found python310-3.10.14nb1 => Full dependency py310-numpy>=1.20.3nb1: found py310-numpy-2.1.0 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py310-macs2-2.2.9.1 ===> Extracting for py310-macs2-2.2.9.1 ===> Patching for py310-macs2-2.2.9.1 => Applying pkgsrc patches for py310-macs2-2.2.9.1 ************************************** Ignoring patch file /usr/pkgsrc/biology/py-macs2/patches/patch-MACS2_IO_CallPeakUnit.pyx: invalid checksum ************************************** ************************************** Ignoring patch file /usr/pkgsrc/biology/py-macs2/patches/patch-MACS2_IO_FixWidthTrack.pyx: invalid checksum ************************************** ERROR: Patching failed due to modified or broken patch file(s): ERROR: /usr/pkgsrc/biology/py-macs2/patches/patch-MACS2_IO_CallPeakUnit.pyx ERROR: /usr/pkgsrc/biology/py-macs2/patches/patch-MACS2_IO_FixWidthTrack.pyx *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/biology/py-macs2 *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/py-macs2