=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for subread-2.0.8
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o core.o core.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o core-junction.o core-junction.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o core-indel.o core-indel.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o sambam-file.o sambam-file.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o sublog.o sublog.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o gene-algorithms.o gene-algorithms.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o hashtable.o hashtable.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o input-files.o input-files.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o sorted-hashtable.o sorted-hashtable.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o gene-value-index.o gene-value-index.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o exon-algorithms.o exon-algorithms.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o HelperFunctions.o HelperFunctions.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o interval_merge.o interval_merge.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o long-hashtable.o long-hashtable.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o core-bigtable.o core-bigtable.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o seek-zlib.o seek-zlib.c
gcc -DMAKE_FOR_EXON  -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\"  -D_FILE_OFFSET_BITS=64 -O2 -fcommon -I/usr/include -I/usr/include  -c -o input-blc.o input-blc.c
HelperFunctions.c:51:10: fatal error: sys/sysinfo.h: No such file or directory
   51 | #include <sys/sysinfo.h>
      |          ^~~~~~~~~~~~~~~
compilation terminated.
gmake: *** [<builtin>: HelperFunctions.o] Error 1
gmake: *** Waiting for unfinished jobs....
input-blc.c: In function 'cbcl_close':
input-blc.c:356:2: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration]
  356 |  close(fp->cbcl_bin_fd);
      |  ^~~~~
      |  pclose
input-blc.c: In function 'iCache_continuous_read_lanes':
input-blc.c:489:11: warning: implicit declaration of function 'read'; did you mean 'fread'? [-Wimplicit-function-declaration]
  489 |       rrv=read(tfp -> cbcl_bin_fd,&btmp,1);// bits per call.
      |           ^~~~
      |           fread
input-blc.c:529:32: warning: implicit declaration of function 'dup' [-Wimplicit-function-declaration]
  529 |      tfp -> gzblock_fp=gzdopen(dup(tfp -> cbcl_bin_fd),"rb");
      |                                ^~~
*** Error code 2

Stop.
make[1]: stopped in /usr/pkgsrc/biology/subread
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/biology/subread