=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-rgdal-1.6.7nb12 => Generating pre-install file lists => Creating installation directories * installing *source* package 'rgdal' ... ** package 'rgdal' successfully unpacked and MD5 sums checked ** using staged installation configure: R_HOME: /usr/pkg/lib/R configure: CC: gcc configure: CXX: c++ configure: CFLAGS: -O2 -march=i586 -I/usr/pkg/include -I/usr/include configure: CPPFLAGS: -I/usr/pkg/include -I/usr/include configure: CXXFLAGS: -O2 -march=i586 -I/usr/pkg/include -I/usr/include configure: LDFLAGS: -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -lexecinfo configure: LDFLAGS: -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -lexecinfo configure: CXX17 is: c++, CXX17STD is: -std=gnu++17 configure: CXX is: c++ -std=gnu++17 configure: C++17 support available configure: rgdal: 1.6-7 checking for /usr/bin/svnversion... no configure: svn revision: 1203 checking for gdal-config... /usr/pkg/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.10.2 checking GDAL version != 3.6.0... yes checking GDAL version >= 1.11.4... yes checking GDAL version <= 2.5 or >= 3.0... yes checking GDAL: linking with --libs only... yes checking GDAL: gdal-config data directory readable... yes checking GDAL: /usr/pkg/share/gdal/stateplane.csv readable... yes configure: pkg-config proj exists, will use it configure: PROJ version: 9.5.1 configure: PROJ CPP flags: -DPROJ_H_API -I/usr/pkg/include configure: PROJ LIBS: -L/usr/pkg/lib -lproj checking PROJ header API:... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether c++ -std=gnu++17 accepts -g... yes checking for c++ -std=gnu++17 option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for proj.h... yes checking for proj_context_create in -lproj... yes checking Using GDAL < 3 with PROJ >= 6... no checking PROJ version >= 4.8.0... yes checking PROJ: proj.db found and readable... yes configure: Package CPP flags: -I/usr/pkg/include -I/usr/pkg/include -DPROJ_H_API configure: Package LIBS: -L/usr/pkg/lib -lgdal -L/usr/pkg/lib -lproj configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: 'gcc (nb4 20200810) 7.5.0' using C++ compiler: 'g++ (nb4 20200810) 7.5.0' using C++17 c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I/usr/pkg/include -DPROJ_H_API -I'/usr/pkg/lib/R/library/sp/include' -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -fpic -O2 -march=i586 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -c OGR_write.cpp -o OGR_write.o In file included from OGR_write.cpp:11:0: rgdal.h:15:10: fatal error: sp.h: No such file or directory #include "sp.h" ^~~~~~ compilation terminated. *** Error code 1 Stop. make: stopped in /pbulk/work/geography/R-rgdal/work/rgdal/src ERROR: compilation failed for package 'rgdal' * removing '/pbulk/work/geography/R-rgdal/work/.destdir/usr/pkg/lib/R/library/rgdal' *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/geography/R-rgdal *** Error code 1 Stop. make: stopped in /usr/pkgsrc/geography/R-rgdal