=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for libpll-0.3.2 --- ./aclocal.m4 --- CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing aclocal-1.14 -I m4 --install WARNING: 'aclocal' is missing on your system. You should only need it if you modified 'acinclude.m4' or 'configure.ac'. You might want to install the Automake and Perl packages. Grab them from any GNU archive site. --- ./configure --- --- ./config.h.in --- --- ./configure --- CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing autoconf --- ./config.h.in --- (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing autoheader) --- ./configure --- WARNING: 'autoconf' is missing on your system. You should only need it if you modified 'configure.ac'. You might want to install the Autoconf and GNU m4 packages. Grab them from any GNU archive site. --- ./config.h.in --- WARNING: 'autoheader' is missing on your system. You should only need it if you modified 'acconfig.h' or 'configure.ac'. You might want to install the Autoconf and GNU m4 packages. Grab them from any GNU archive site. --- ./config.status --- /bin/sh ./config.status --recheck --- ./config.h.in --- rm -f stamp-h1 touch ./config.h.in --- stamp-h1 --- cd . && /bin/sh ./config.status config.h config.status: creating config.h config.status: config.h is unchanged --- config.h --- --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in src --- ./Makefile.in --- --- ../config.status --- --- libpll_la-fasta.lo --- --- libpll_la-gamma.lo --- --- libpll_la-likelihood.lo --- --- libpll_la-list.lo --- --- libpll_la-maps.lo --- --- libpll_la-models.lo --- --- ../config.status --- cd .. && /usr/bin/make am--refresh --- libpll_la-fasta.lo --- /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-fasta.lo -MD -MP -MF .deps/libpll_la-fasta.Tpo -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c --- libpll_la-likelihood.lo --- /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-likelihood.lo -MD -MP -MF .deps/libpll_la-likelihood.Tpo -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c --- libpll_la-list.lo --- /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-list.lo -MD -MP -MF .deps/libpll_la-list.Tpo -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c --- ./Makefile.in --- --- ./Makefile.in --- cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing automake-1.14 --foreign --- libpll_la-maps.lo --- /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-maps.lo -MD -MP -MF .deps/libpll_la-maps.Tpo -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c --- ../config.status --- --- ./Makefile.in --- cd . && /bin/sh /pbulk/work/biology/libpll/work/libpll-src-0.3.2/missing automake-1.14 --foreign --- libpll_la-models.lo --- /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-models.lo -MD -MP -MF .deps/libpll_la-models.Tpo -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c --- ./Makefile.in --- WARNING: 'automake' is missing on your system. You should only need it if you modified 'Makefile.am', 'acinclude.m4' or 'configure.ac'. You might want to install the Automake and Perl packages. Grab them from any GNU archive site. --- ../config.status --- WARNING: 'automake' is missing on your system. You should only need it if you modified 'Makefile.am', 'acinclude.m4' or 'configure.ac'. You might want to install the Automake and Perl packages. Grab them from any GNU archive site. --- ./Makefile.in --- --- ./config.status --- /bin/sh ./config.status --recheck --- libpll_la-gamma.lo --- /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-gamma.lo -MD -MP -MF .deps/libpll_la-gamma.Tpo -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c --- ../config.status --- --- ./config.status --- /bin/sh ./config.status --recheck --- libpll_la-models.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-models.lo -MD -MP -MF .deps/libpll_la-models.Tpo -c models.c -fPIC -DPIC -o .libs/libpll_la-models.o --- libpll_la-maps.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-maps.lo -MD -MP -MF .deps/libpll_la-maps.Tpo -c maps.c -fPIC -DPIC -o .libs/libpll_la-maps.o --- ./Makefile.in --- --- Makefile --- cd . && /bin/sh ./config.status Makefile --- libpll_la-models.lo --- In file included from models.c:22:0: pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. --- libpll_la-list.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-list.lo -MD -MP -MF .deps/libpll_la-list.Tpo -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o --- libpll_la-models.lo --- *** [libpll_la-models.lo] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- libpll_la-fasta.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-fasta.lo -MD -MP -MF .deps/libpll_la-fasta.Tpo -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o --- libpll_la-likelihood.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-likelihood.lo -MD -MP -MF .deps/libpll_la-likelihood.Tpo -c likelihood.c -fPIC -DPIC -o .libs/libpll_la-likelihood.o --- libpll_la-maps.lo --- In file included from maps.c:22:0: pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. *** [libpll_la-maps.lo] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- libpll_la-gamma.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -MT libpll_la-gamma.lo -MD -MP -MF .deps/libpll_la-gamma.Tpo -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o --- libpll_la-list.lo --- In file included from list.c:22:0: pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. *** [libpll_la-list.lo] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- ../config.status --- A failure has been detected in another branch of the parallel make make[3]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2 *** [../config.status] Error code 2 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- libpll_la-fasta.lo --- In file included from fasta.c:22:0: pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. *** [libpll_la-fasta.lo] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- libpll_la-likelihood.lo --- In file included from likelihood.c:22:0: pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. *** [libpll_la-likelihood.lo] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- libpll_la-gamma.lo --- In file included from gamma.c:22:0: pll.h:56:10: fatal error: sys/sysinfo.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. *** [libpll_la-gamma.lo] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src --- ./Makefile.in --- config.status: creating Makefile A failure has been detected in another branch of the parallel make make[3]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2 *** [./Makefile.in] Error code 1 make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src 8 errors make[2]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2/src *** [all-recursive] Error code 1 make[1]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2 1 error make[1]: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2 *** [all] Error code 2 make: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2 1 error make: stopped in /pbulk/work/biology/libpll/work/libpll-src-0.3.2 *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/libpll *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/libpll