=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for openbabel-3.1.1.tar.gz
=> Checksum SHA512 OK for openbabel-3.1.1.tar.gz
===> Installing dependencies for openbabel-3.1.1nb34
==========================================================================
The supported build options for openbabel are:
wxwidgets
You can select which build options to use by setting PKG_DEFAULT_OPTIONS
or the following variable. Its current value is shown:
PKG_OPTIONS.openbabel (not defined)
==========================================================================
=> Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.82.4
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency cmake>=3.18: found cmake-3.31.3
=> Tool dependency pkgconf-[0-9]*: found pkgconf-2.3.0
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Build dependency boost-headers-1.87.*: found boost-headers-1.87.0
=> Build dependency eigen3>=3.1.2: found eigen3-3.4.0nb1
=> Build dependency rapidjson>=1.1.0: found rapidjson-1.1.0nb2
=> Build dependency x11-links>=1.36: found x11-links-1.36
=> Full dependency boost-libs-1.87.*: found boost-libs-1.87.0
=> Full dependency boost-libs>=1.87.0: found boost-libs-1.87.0
=> Full dependency cairo>=1.18.0nb2: found cairo-1.18.2
=> Full dependency coordgenlibs>=1.4.2nb9: found coordgenlibs-1.4.2nb9
=> Full dependency libxml2>=2.12.9nb3: found libxml2-2.12.9nb3
=> Full dependency maeparser>=1.2.4nb9: found maeparser-1.2.4nb9
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for openbabel-3.1.1nb34
===> Extracting for openbabel-3.1.1nb34
/bin/mkdir -p /pbulk/work/biology/openbabel/work/build
===> Patching for openbabel-3.1.1nb34
=> Applying pkgsrc patches for openbabel-3.1.1nb34
===> Creating toolchain wrappers for openbabel-3.1.1nb34
===> Configuring for openbabel-3.1.1nb34
=> Generating pkg-config file for builtin expat package.
=> Generating pkg-config files for builtin xz package.
=> Adding run-time search paths to pkg-config files.
=> Fixing CMAKE_MODULE_PATH in CMakeLists.txt
CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /pbulk/work/biology/openbabel/work/.cwrapper/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /pbulk/work/biology/openbabel/work/.cwrapper/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Using included inchi library.
-- Found LibXml2: /usr/pkg/lib/libxml2.so (found version "2.12.9")
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.10")
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS)
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - not found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
CMake Warning (dev) at CMakeLists.txt:299 (exec_program):
Policy CMP0153 is not set: The exec_program command should not be called.
Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Use execute_process() instead.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Checking available shared pointer...
-- Performing Test HAVE_STD_SHARED_PTR
-- Performing Test HAVE_STD_SHARED_PTR - Success
-- Performing Test HAVE_STD_TR1_SHARED_PTR
-- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success
-- Use std::shared_ptr in memory
CMake Warning (dev) at CMakeLists.txt:358 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /pbulk/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found version "1.87.0") found components: program_options iostreams
-- Found Eigen3: /usr/pkg/include/eigen3 (Required is at least version "2.91.0")
CMake Warning (dev) at CMakeLists.txt:473 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /pbulk/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found version "1.87.0") found components: filesystem iostreams unit_test_framework
-- maeparser include dir set as '/usr/pkg/include'
-- maeparser libraries set as '/usr/pkg/lib/libmaeparser.so'
-- Maestro formats will be supported. Using MaeParser libraries at /usr/pkg/lib/libmaeparser.so.
-- coordgen include dir set as /usr/pkg/include
-- coordgen libraries set as '/usr/pkg/lib/libcoordgen.so'
-- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/pkg/lib/libcoordgen.so.
-- Found PkgConfig: /pbulk/work/biology/openbabel/work/.tools/bin/pkg-config (found version "2.3.0")
-- Found RapidJSON: /usr/pkg/include (found suitable version "1.1.0", minimum required is "1.1.0")
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/pkg/include
-- Checking for module 'cairo'
-- Found cairo, version 1.18.2
-- Found Cairo: /usr/pkg/lib/libcairo.so
-- Cairo found. PNG output will be supported.
CMake Warning (dev) at src/CMakeLists.txt:6 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /pbulk/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found suitable version "1.87.0", minimum required is "1.45.0") found components: system
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /pbulk/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found version "1.87.0") found components: program_options iostreams
-- Looking for getopt
-- Looking for getopt - found
-- GUI will not be built
CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
test/CMakeLists.txt:226 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/pkg/bin/python3.12 (found version "3.12.8")
CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- Configuring done (5.8s)
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
Boost_INCLUDE_DIR
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/include
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/data
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/doc
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/src
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/src
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/src
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/src
used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/src
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used as include directory in directory /pbulk/work/biology/openbabel/work/openbabel-openbabel-3-1-1/src
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CMake Error in src/CMakeLists.txt:
Found relative path while evaluating include directories of "openbabel":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/CMakeLists.txt:
Found relative path while evaluating include directories of
"plugin_descriptors":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/CMakeLists.txt:
Found relative path while evaluating include directories of
"plugin_fingerprints":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/CMakeLists.txt:
Found relative path while evaluating include directories of
"plugin_forcefields":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/CMakeLists.txt:
Found relative path while evaluating include directories of "plugin_ops":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/CMakeLists.txt:
Found relative path while evaluating include directories of
"plugin_charges":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "smilesformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mdlformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mol2format":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "pdbformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "inchiformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "asciiformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "copyformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "MNAformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "molreport":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "nulformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"painterformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "povrayformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "reportformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "svgformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "textformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "titleformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "confabreport":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "pngformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "acesformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "abinitformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "adfformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"aoforceformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "castepformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"crystal09format":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "daltonformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "dmolformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "fchkformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"fhiaimsformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "gamessformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "gaussformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"gausscubeformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"gausszmatformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "gulpformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "hinformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "jaguarformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "molproformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mopacformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "nwchemformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "pwscfformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "qchemformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "siestaformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"turbomoleformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "vaspformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "xsfformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "zindoformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "maeformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"gamessukformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "orcaformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "APIInterface":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "CSRformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "PQSformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "MCDLformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"alchemyformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "acrformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "amberformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "balstformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "bgfformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "boxformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cacaoformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cacheformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "carformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cccformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "chem3dformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "chemdrawct":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"chemtoolformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cifformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cofformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "crkformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cssrformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "dlpolyformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "exyzformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"fastsearchformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "fastaformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "featformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "fhformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"fingerprintformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "fpsformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"freefracformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"ghemicalformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"gromos96format":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "groformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "lmpdatformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "lpmdformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mdffformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mmcifformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mmodformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "moldenformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mpdformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "mpqcformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "msiformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "msmsformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "opendxformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "outformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"pcmodelformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "pdbqtformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"pointcloudformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "posformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "pqrformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "shelxformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "smileyformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "stlformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "thermoformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "tinkerformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"unichemformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"viewmolformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "wlnformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "xedformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "xyzformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "yasaraformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "rxnformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "chemdrawcdx":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"chemkinformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "rinchiformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "rsmiformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "png2format":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cdxmlformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "cmlformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "pubchem":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of "xmlformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"cmlreactformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"chemdoodlejsonformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/CMakeLists.txt:
Found relative path while evaluating include directories of
"pubchemjsonformat":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in src/formats/libinchi/CMakeLists.txt:
Found relative path while evaluating include directories of "inchi":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obabel":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obconformer":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obenergy":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obfit":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obfitall":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obgen":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obminimize":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obmm":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obprobe":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obprop":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obrotamer":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obrotate":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obsym":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obtautomer":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obthermo":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obdistgen":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obgrep":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of
"obspectrophore":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in tools/CMakeLists.txt:
Found relative path while evaluating include directories of "obrms":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in test/CMakeLists.txt:
Found relative path while evaluating include directories of "test_runner":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in test/CMakeLists.txt:
Found relative path while evaluating include directories of
"test_inchiwrite":
"Boost_INCLUDE_DIR-NOTFOUND"
CMake Error in test/CMakeLists.txt:
Found relative path while evaluating include directories of "roundtrip":
"Boost_INCLUDE_DIR-NOTFOUND"
-- Generating done (0.6s)
CMake Warning:
Manually-specified variables were not used by the project:
LLVM_CONFIG
CMake Generate step failed. Build files cannot be regenerated correctly.
*** Error code 1
Stop.
make[1]: stopped in /usr/pkgsrc/biology/openbabel
*** Error code 1
Stop.
make: stopped in /usr/pkgsrc/biology/openbabel