=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-xml2-1.3.6nb4 => Generating pre-install file lists => Creating installation directories * installing *source* package 'xml2' ... ** package 'xml2' successfully unpacked and MD5 sums checked ** using staged installation Warning in system2(file.path(R.home("bin"), "R"), c("CMD", "config", x), : running command ''/usr/pkg/lib/R/bin/R' CMD config FCFLAGS' had status 1 Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/pkg/include/libxml2 Using PKG_LIBS=-Wl,-R/usr/pkg/lib -L/usr/pkg/lib -lxml2 -L/usr/lib -lz -L/usr/lib -llzma -lm ------------------------- ANTICONF ERROR --------------------------- Configuration failed because libxml-2.0 was not found. Try installing: * deb: libxml2-dev (Debian, Ubuntu, etc) * rpm: libxml2-devel (Fedora, CentOS, RHEL) * csw: libxml2_dev (Solaris) If libxml-2.0 is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------------------------------------------------- ERROR: configuration failed for package 'xml2' * removing '/pbulk/work/textproc/R-xml2/work/.destdir/usr/pkg/lib/R/library/xml2' *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/textproc/R-xml2 *** Error code 1 Stop. make: stopped in /usr/pkgsrc/textproc/R-xml2