=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-rgeos-0.6.3 => Generating pre-install file lists => Creating installation directories * installing *source* package 'rgeos' ... ** package 'rgeos' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: c++ configure: rgeos: 0.6-3 checking for /usr/bin/svnversion... no configure: svn revision: 696 checking for geos-config... /usr/pkg/bin/geos-config checking geos-config usability... yes configure: GEOS version: 3.13.0 checking geos version at least 3.2.0... yes checking geos-config clibs... yes checking geos_c.h presence and usability... yes checking geos: linking with libgeos_c... yes configure: PKG_CPPFLAGS: -I/usr/pkg/include configure: PKG_LIBS: -L/usr/pkg/lib -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: 'gcc (nb4 20200810) 7.5.0' using C++ compiler: 'g++ (nb4 20200810) 7.5.0' c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I'/usr/pkg/lib/R/library/sp/include' -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -c dummy.cc -o dummy.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I'/usr/pkg/lib/R/library/sp/include' -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -c init.c -o init.o In file included from init.c:3:0: rgeos.h:59:10: fatal error: sp.h: No such file or directory #include "sp.h" ^~~~~~ compilation terminated. *** Error code 1 Stop. make: stopped in /pbulk/work/geography/R-rgeos/work/rgeos/src ERROR: compilation failed for package 'rgeos' * removing '/pbulk/work/geography/R-rgeos/work/.destdir/usr/pkg/lib/R/library/rgeos' *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/geography/R-rgeos *** Error code 1 Stop. make: stopped in /usr/pkgsrc/geography/R-rgeos